IL_3J2G_028

3D structure

PDB id

3J2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

16.5 Å

Loop

Sequence

GUA*UGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2G_028 not in the Motif Atlas

Geometric match to IL_8C3A_472

Geometric discrepancy: 0.3717

The information below is about IL_8C3A_472

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

3J2G|1|N|G|457
3J2G|1|N|U|458
3J2G|1|N|A|459
*
3J2G|1|N|U|473
3J2G|1|N|G|474
3J2G|1|N|C|475

Current chains

Chain N

16S rRNA

Nearby chains