IL_3J2G_042

3D structure

PDB id

3J2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

16.5 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

3J2G|1|N|A|665

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2G_042 not in the Motif Atlas

Geometric match to IL_1G1X_003

Geometric discrepancy: 0.268

The information below is about IL_1G1X_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

3J2G|1|N|U|662
3J2G|1|N|A|663
3J2G|1|N|G|664
3J2G|1|N|A|665
3J2G|1|N|G|666
*
3J2G|1|N|U|740
3J2G|1|N|G|741
3J2G|1|N|G|742
3J2G|1|N|A|743

Current chains

Chain N

16S rRNA

Nearby chains