IL_3J2G_046

3D structure

PDB id

3J2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

16.5 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2G_046 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.465

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

3J2G|1|N|G|887
3J2G|1|N|G|888
3J2G|1|N|A|889
3J2G|1|N|G|890
3J2G|1|N|U|891
3J2G|1|N|A|892
3J2G|1|N|C|893
3J2G|1|N|G|894
*
3J2G|1|N|U|905
3J2G|1|N|A|906
3J2G|1|N|A|907
3J2G|1|N|A|908
3J2G|1|N|A|909
3J2G|1|N|C|910

Current chains

Chain N

16S rRNA

Nearby chains