IL_3J2G_095

3D structure

PDB id

3J2G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Dissecting the in vivo assembly of the 30S ribosomal subunit reveals the role of RimM

Experimental method

ELECTRON MICROSCOPY

Resolution

16.5 Å

Loop

Sequence

AGAAU*GGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J2G_095 not in the Motif Atlas

Geometric match to IL_5J7L_361

Geometric discrepancy: 0.3263

The information below is about IL_5J7L_361

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

3J2G|1|N|A|673
3J2G|1|N|G|674
3J2G|1|N|A|675
3J2G|1|N|A|676
3J2G|1|N|U|677
*
3J2G|1|N|G|713
3J2G|1|N|G|714
3J2G|1|N|A|715
3J2G|1|N|A|716
3J2G|1|N|U|717

Current chains

Chain N

16S rRNA

Nearby chains