IL_3J45_010

3D structure

PDB id

3J45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a non-translocating SecY protein channel with the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

GUGG*CUGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J45_010 not in the Motif Atlas

Geometric match to IL_5EW4_001

Geometric discrepancy: 0.3499

The information below is about IL_5EW4_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_76776.3

Basepair signature

cWW-L-R-cWW-cWW

Number of instances in this motif group

6

Unit IDs

3J45|1|5|G|2138
3J45|1|5|U|2139
3J45|1|5|G|2140
3J45|1|5|G|2141
*
3J45|1|5|C|2150
3J45|1|5|U|2151
3J45|1|5|G|2152
3J45|1|5|C|2153

Current chains

Chain 5

23S ribosomal RNA

Nearby chains