IL_3J45_012

3D structure

PDB id

3J45 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a non-translocating SecY protein channel with the 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

9.5 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J45_012 not in the Motif Atlas

Geometric match to IL_5J7L_387

Geometric discrepancy: 0.2464

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

3J45|1|4|U|1851
3J45|1|4|U|1852
3J45|1|4|A|1853
3J45|1|4|A|1854
3J45|1|4|U|1855
3J45|1|4|U|1856
3J45|1|4|G|1857
3J45|1|4|A|1858
3J45|1|4|U|1859
3J45|1|4|G|1860
*
3J45|1|4|U|1882
3J45|1|4|U|1883
3J45|1|4|G|1884
3J45|1|4|A|1885
3J45|1|4|U|1886
3J45|1|4|C|1887
3J45|1|4|G|1888
3J45|1|4|A|1889
3J45|1|4|A|1890
3J45|1|4|G|1891

Current chains

Chain 4

23S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA