IL_3J46_003

3D structure

PDB id

3J46 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SecY protein translocation channel in action

Experimental method

ELECTRON MICROSCOPY

Resolution

10.1 Å

Loop

Sequence

CCAAC*GGG

Length

8 nucleotides

Bulged bases

3J46|1|2|G|1332

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J46_003 not in the Motif Atlas

Geometric match to IL_5J7L_291

Geometric discrepancy: 0.1196

The information below is about IL_5J7L_291

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.11

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

19

Unit IDs

3J46|1|2|C|1319
3J46|1|2|C|1320
3J46|1|2|A|1321
3J46|1|2|A|1322
3J46|1|2|C|1323
*
3J46|1|2|G|1331
3J46|1|2|G|1332
3J46|1|2|G|1333

Current chains

Chain 2

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23P

Chain n

NC100

Chain y

Protein translocase subunit SecY