IL_3J46_004

3D structure

PDB id

3J46 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SecY protein translocation channel in action

Experimental method

ELECTRON MICROSCOPY

Resolution

10.1 Å

Loop

Sequence

CGAG*UGAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J46_004 not in the Motif Atlas

Geometric match to IL_5J7L_303

Geometric discrepancy: 0.1249

The information below is about IL_5J7L_303

Detailed Annotation

UAA/GAN variation

Broad Annotation

UAA/GAN variation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

3J46|1|3|C|1526
3J46|1|3|G|1527
3J46|1|3|A|1528
3J46|1|3|G|1529
*
3J46|1|3|U|1542
3J46|1|3|G|1543
3J46|1|3|A|1544
3J46|1|3|A|1545
3J46|1|3|G|1546

Current chains

Chain 3

23S ribosomal RNA

Nearby chains