IL_3J46_005

3D structure

PDB id

3J46 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the SecY protein translocation channel in action

Experimental method

ELECTRON MICROSCOPY

Resolution

10.1 Å

Loop

Sequence

CCU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J46_005 not in the Motif Atlas

Geometric match to IL_1NBS_006

Geometric discrepancy: 0.2281

The information below is about IL_1NBS_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

3J46|1|4|C|2103
3J46|1|4|C|2104
3J46|1|4|U|2105
*
3J46|1|4|A|2184
3J46|1|4|U|2185
3J46|1|4|G|2186

Current chains

Chain 4

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L1