IL_3J5L_041

3D structure

PDB id

3J5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmBL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

3J5L|1|A|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J5L_041 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.3297

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

3J5L|1|A|G|1059
3J5L|1|A|U|1060
3J5L|1|A|U|1061
3J5L|1|A|G|1062
*
3J5L|1|A|C|1076
3J5L|1|A|A|1077
3J5L|1|A|U|1078
3J5L|1|A|C|1079

Current chains

Chain A

23S ribsomal RNA

Nearby chains

Chain I

50S ribosomal protein L11