IL_3J5L_072

3D structure

PDB id

3J5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmBL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

3J5L|1|A|A|1801, 3J5L|1|A|C|1816, 3J5L|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J5L_072 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0501

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

3J5L|1|A|U|1798
3J5L|1|A|G|1799
3J5L|1|A|C|1800
3J5L|1|A|A|1801
3J5L|1|A|A|1802
3J5L|1|A|A|1803
3J5L|1|A|C|1804
*
3J5L|1|A|G|1813
3J5L|1|A|G|1814
3J5L|1|A|A|1815
3J5L|1|A|C|1816
3J5L|1|A|G|1817
3J5L|1|A|U|1818
3J5L|1|A|A|1819
3J5L|1|A|U|1820
3J5L|1|A|A|1821

Current chains

Chain A

23S ribsomal RNA

Nearby chains

Chain C

50S ribosomal protein L2