IL_3J5L_101

3D structure

PDB id

3J5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli 50S subunit with ErmBL nascent chain

Experimental method

ELECTRON MICROSCOPY

Resolution

6.6 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

3J5L|1|A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J5L_101 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0607

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

3J5L|1|A|C|2636
3J5L|1|A|U|2637
3J5L|1|A|G|2638
3J5L|1|A|A|2639
3J5L|1|A|G|2640
*
3J5L|1|A|C|2774
3J5L|1|A|G|2775
3J5L|1|A|A|2776
3J5L|1|A|G|2777
3J5L|1|A|A|2778
3J5L|1|A|U|2779
3J5L|1|A|G|2780
3J5L|1|A|A|2781
3J5L|1|A|G|2782

Current chains

Chain A

23S ribsomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13