IL_3J5S_004

3D structure

PDB id

3J5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

EttA binds to ribosome exit site and regulates translation by restricting ribosome and tRNA dynamics

Experimental method

ELECTRON MICROSCOPY

Resolution

7.5 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J5S_004 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1384

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

3J5S|1|A|U|1851
3J5S|1|A|U|1852
3J5S|1|A|A|1853
3J5S|1|A|A|1854
3J5S|1|A|U|1855
3J5S|1|A|U|1856
3J5S|1|A|G|1857
3J5S|1|A|A|1858
3J5S|1|A|U|1859
3J5S|1|A|G|1860
*
3J5S|1|A|U|1882
3J5S|1|A|U|1883
3J5S|1|A|G|1884
3J5S|1|A|A|1885
3J5S|1|A|U|1886
3J5S|1|A|C|1887
3J5S|1|A|G|1888
3J5S|1|A|A|1889
3J5S|1|A|A|1890
3J5S|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Energy-dependent translational throttle A (EttA)

Chain F

50S ribosomal protein L1