IL_3J5S_013

3D structure

PDB id

3J5S (explore in PDB, NAKB, or RNA 3D Hub)

Description

EttA binds to ribosome exit site and regulates translation by restricting ribosome and tRNA dynamics

Experimental method

ELECTRON MICROSCOPY

Resolution

7.5 Å

Loop

Sequence

UGG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J5S_013 not in the Motif Atlas

Geometric match to IL_1Z7F_005

Geometric discrepancy: 0.3136

The information below is about IL_1Z7F_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

3J5S|1|A|U|2139
3J5S|1|A|G|2140
3J5S|1|A|G|2141
*
3J5S|1|A|C|2150
3J5S|1|A|U|2151
3J5S|1|A|G|2152

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain F

50S ribosomal protein L1