IL_3J6B_003
3D structure
- PDB id
- 3J6B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast mitochondrial large ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUGGAG*UGAAAAU
- Length
- 13 nucleotides
- Bulged bases
- 3J6B|1|A|A|409
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6B_003 not in the Motif Atlas
- Geometric match to IL_7A0S_018
- Geometric discrepancy: 0.3005
- The information below is about IL_7A0S_018
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_06136.2
- Basepair signature
- cWW-tHS-cWW-tHS-tSH-tSH-cWW
- Number of instances in this motif group
- 6
Unit IDs
3J6B|1|A|A|58
3J6B|1|A|U|59
3J6B|1|A|G|60
3J6B|1|A|G|61
3J6B|1|A|A|62
3J6B|1|A|G|63
*
3J6B|1|A|U|407
3J6B|1|A|G|408
3J6B|1|A|A|409
3J6B|1|A|A|410
3J6B|1|A|A|411
3J6B|1|A|A|412
3J6B|1|A|U|413
Current chains
- Chain A
- 21S ribosomal RNA
Nearby chains
- Chain O
- 54S ribosomal protein L22, mitochondrial
- Chain P
- 54S ribosomal protein L41, mitochondrial
- Chain Q
- 54S ribosomal protein L40, mitochondrial
- Chain W
- 54S ribosomal protein L32, mitochondrial
Coloring options: