IL_3J6B_038
3D structure
- PDB id
- 3J6B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the yeast mitochondrial large ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUUAAA*UAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6B_038 not in the Motif Atlas
- Geometric match to IL_5EW4_002
- Geometric discrepancy: 0.3257
- The information below is about IL_5EW4_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
3J6B|1|A|A|1372
3J6B|1|A|U|1373
3J6B|1|A|U|1374
3J6B|1|A|A|1375
3J6B|1|A|A|1381
3J6B|1|A|A|1382
*
3J6B|1|A|U|1391
3J6B|1|A|A|1392
3J6B|1|A|U|1393
3J6B|1|A|U|1394
Current chains
- Chain A
- 21S ribosomal RNA
Nearby chains
- Chain B
- 54S ribosomal protein RML2, mitochondrial
- Chain S
- 54S ribosomal protein L24, mitochondrial
- Chain Y
- 54S ribosomal protein L34, mitochondrial
Coloring options: