IL_3J6B_056

3D structure

PDB id

3J6B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the yeast mitochondrial large ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAAUUCCUUG*CCCG

Length

16 nucleotides

Bulged bases

3J6B|1|A|A|1838, 3J6B|1|A|U|1844, 3J6B|1|A|C|1863

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6B_056 not in the Motif Atlas

Homologous match to IL_4WF9_077

Geometric discrepancy: 0.1231

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

3J6B|1|A|C|1834
3J6B|1|A|G|1835
3J6B|1|A|A|1836
3J6B|1|A|A|1837
3J6B|1|A|A|1838
3J6B|1|A|U|1839
3J6B|1|A|U|1840
3J6B|1|A|C|1841
3J6B|1|A|C|1842
3J6B|1|A|U|1843
3J6B|1|A|U|1844
3J6B|1|A|G|1845
*
3J6B|1|A|C|1861
3J6B|1|A|C|1862
3J6B|1|A|C|1863
3J6B|1|A|G|1864

Current chains

Chain A

21S ribosomal RNA

Nearby chains

Chain B

54S ribosomal protein RML2, mitochondrial