IL_3J6X_021
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GGG*CGAUUC
- Length
- 9 nucleotides
- Bulged bases
- 3J6X|1|1S|U|380
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6X_021 not in the Motif Atlas
- Homologous match to IL_4V88_404
- Geometric discrepancy: 0.2277
- The information below is about IL_4V88_404
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_11347.3
- Basepair signature
- cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
3J6X|1|1S|G|363
3J6X|1|1S|G|364
3J6X|1|1S|G|365
*
3J6X|1|1S|C|376
3J6X|1|1S|G|377
3J6X|1|1S|A|378
3J6X|1|1S|U|379
3J6X|1|1S|U|380
3J6X|1|1S|C|381
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 23
- 40S ribosomal protein S23
- Chain S4
- 40S ribosomal protein S4
- Chain S9
- 40S ribosomal protein S9
Coloring options: