IL_3J6X_023

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6X_023 not in the Motif Atlas

Homologous match to IL_4V88_406

Geometric discrepancy: 0.4085

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

3J6X|1|1S|C|411
3J6X|1|1S|A|412
3J6X|1|1S|U|413
*
3J6X|1|1S|A|420
3J6X|1|1S|A|421
3J6X|1|1S|G|422

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 63

60S ribosomal protein L23

Chain S6

40S ribosomal protein S6