IL_3J6X_039
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GAAAAAAUU*AUAUUAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6X_039 not in the Motif Atlas
- Homologous match to IL_4V88_425
- Geometric discrepancy: 0.2936
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
3J6X|1|1S|G|751
3J6X|1|1S|A|752
3J6X|1|1S|A|753
3J6X|1|1S|A|754
3J6X|1|1S|A|755
3J6X|1|1S|A|756
3J6X|1|1S|A|757
3J6X|1|1S|U|758
3J6X|1|1S|U|759
*
3J6X|1|1S|A|791
3J6X|1|1S|U|792
3J6X|1|1S|A|793
3J6X|1|1S|U|794
3J6X|1|1S|U|795
3J6X|1|1S|A|796
3J6X|1|1S|G|797
3J6X|1|1S|C|798
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 11
- 40S ribosomal protein S11
- Chain 22
- 40S ribosomal protein S22
- Chain S4
- 40S ribosomal protein S4
- Chain S9
- 40S ribosomal protein S9
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