IL_3J6X_052
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GGAGUAUG*UGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6X_052 not in the Motif Atlas
- Homologous match to IL_4V88_440
- Geometric discrepancy: 0.1402
- The information below is about IL_4V88_440
- Detailed Annotation
- 8x6 Sarcin-Ricin with inserted Y; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_41756.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
3J6X|1|1S|G|1111
3J6X|1|1S|G|1112
3J6X|1|1S|A|1113
3J6X|1|1S|G|1114
3J6X|1|1S|U|1115
3J6X|1|1S|A|1116
3J6X|1|1S|U|1117
3J6X|1|1S|G|1118
*
3J6X|1|1S|U|1129
3J6X|1|1S|G|1130
3J6X|1|1S|A|1131
3J6X|1|1S|A|1132
3J6X|1|1S|A|1133
3J6X|1|1S|C|1134
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 23
- 40S ribosomal protein S23
- Chain 2S
- Large subunit ribosomal RNA; LSU rRNA
- Chain 81
- 60S ribosomal protein L41
Coloring options: