IL_3J6X_077
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GCCC*GUAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6X_077 not in the Motif Atlas
- Homologous match to IL_4V88_464
- Geometric discrepancy: 0.2344
- The information below is about IL_4V88_464
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65718.1
- Basepair signature
- cWW-cSH-cWS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
3J6X|1|1S|G|1638
3J6X|1|1S|C|1639
3J6X|1|1S|C|1640
3J6X|1|1S|C|1641
*
3J6X|1|1S|G|1760
3J6X|1|1S|U|1761
3J6X|1|1S|A|1762
3J6X|1|1S|A|1763
3J6X|1|1S|C|1764
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 2S
- Large subunit ribosomal RNA; LSU rRNA
- Chain 81
- 60S ribosomal protein L41
- Chain IR
- TSV IRES mRNA
Coloring options: