IL_3J6X_085

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CUCA*UUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6X_085 not in the Motif Atlas

Geometric match to IL_5TBW_129

Geometric discrepancy: 0.1859

The information below is about IL_5TBW_129

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

3J6X|1|1S|C|1675
3J6X|1|1S|U|1676
3J6X|1|1S|C|1677
3J6X|1|1S|A|1678
*
3J6X|1|1S|U|1723
3J6X|1|1S|U|1724
3J6X|1|1S|U|1725
3J6X|1|1S|G|1726

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 64

60S ribosomal protein L24

Chain S6

40S ribosomal protein S6

Chain S8

40S ribosomal protein S8