IL_3J6X_086
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- AGGAU*AGAAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6X_086 not in the Motif Atlas
- Homologous match to IL_4V88_474
- Geometric discrepancy: 0.2229
- The information below is about IL_4V88_474
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_95716.2
- Basepair signature
- cWW-cWW-tHS-tHS-tSH-cWW
- Number of instances in this motif group
- 18
Unit IDs
3J6X|1|1S|A|1678
3J6X|1|1S|G|1679
3J6X|1|1S|G|1680
3J6X|1|1S|A|1681
3J6X|1|1S|U|1682
*
3J6X|1|1S|A|1719
3J6X|1|1S|G|1720
3J6X|1|1S|A|1721
3J6X|1|1S|A|1722
3J6X|1|1S|U|1723
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 64
- 60S ribosomal protein L24
- Chain S6
- 40S ribosomal protein S6
- Chain S8
- 40S ribosomal protein S8
Coloring options: