IL_3J6X_115
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GUGAAG*UGGAGGC
- Length
- 13 nucleotides
- Bulged bases
- 3J6X|1|2S|G|860
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6X_115 not in the Motif Atlas
- Geometric match to IL_3FTF_001
- Geometric discrepancy: 0.2011
- The information below is about IL_3FTF_001
- Detailed Annotation
- Quadruple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_71841.1
- Basepair signature
- cWW-tSH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
3J6X|1|2S|G|833
3J6X|1|2S|U|834
3J6X|1|2S|G|835
3J6X|1|2S|A|836
3J6X|1|2S|A|837
3J6X|1|2S|G|838
*
3J6X|1|2S|U|855
3J6X|1|2S|G|856
3J6X|1|2S|G|857
3J6X|1|2S|A|858
3J6X|1|2S|G|859
3J6X|1|2S|G|860
3J6X|1|2S|C|861
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 59
- 60S ribosomal protein L19
- Chain 83
- 60S ribosomal protein L43
- Chain L2
- 60S ribosomal protein L2
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