IL_3J6X_128

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

UUCCG*UGA

Length

8 nucleotides

Bulged bases

3J6X|1|2S|C|1016, 3J6X|1|2S|C|1017

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6X_128 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.3626

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

3J6X|1|2S|U|1014
3J6X|1|2S|U|1015
3J6X|1|2S|C|1016
3J6X|1|2S|C|1017
3J6X|1|2S|G|1018
*
3J6X|1|2S|U|1034
3J6X|1|2S|G|1035
3J6X|1|2S|A|1036

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 50

60S ribosomal protein L10

Chain 51

60S ribosomal protein L11

Chain IR

TSV IRES mRNA

Chain L5

60S ribosomal protein L5