IL_3J6X_129

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CUUG*CGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6X_129 not in the Motif Atlas

Geometric match to IL_3WBM_003

Geometric discrepancy: 0.2817

The information below is about IL_3WBM_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

3J6X|1|2S|C|1069
3J6X|1|2S|U|1070
3J6X|1|2S|U|1071
3J6X|1|2S|G|1072
*
3J6X|1|2S|C|1086
3J6X|1|2S|G|1087
3J6X|1|2S|U|1088
3J6X|1|2S|G|1089

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 61

60S ribosomal protein L21

Chain 69

60S ribosomal protein L29