IL_3J6X_147

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CUG*CAGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6X_147 not in the Motif Atlas

Geometric match to IL_4N0T_004

Geometric discrepancy: 0.2961

The information below is about IL_4N0T_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32983.1

Basepair signature

cWW-L-cWW-cWW

Number of instances in this motif group

7

Unit IDs

3J6X|1|2S|C|1563
3J6X|1|2S|U|1564
3J6X|1|2S|G|1565
*
3J6X|1|2S|C|1574
3J6X|1|2S|A|1575
3J6X|1|2S|G|1576
3J6X|1|2S|G|1577

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 65

60S ribosomal protein L25

Chain 8S

5.8S ribosomal RNA; 5.8S rRNA

Chain L8

60S ribosomal protein L8