IL_3J6X_161
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CGUAAC*GGAUAAG
- Length
- 13 nucleotides
- Bulged bases
- 3J6X|1|2S|U|1931
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6X_161 not in the Motif Atlas
- Homologous match to IL_8C3A_084
- Geometric discrepancy: 0.1082
- The information below is about IL_8C3A_084
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_65969.4
- Basepair signature
- cWW-tSH-L-R-tHH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
3J6X|1|2S|C|1918
3J6X|1|2S|G|1919
3J6X|1|2S|U|1920
3J6X|1|2S|A|1921
3J6X|1|2S|A|1922
3J6X|1|2S|C|1923
*
3J6X|1|2S|G|1928
3J6X|1|2S|G|1929
3J6X|1|2S|A|1930
3J6X|1|2S|U|1931
3J6X|1|2S|A|1932
3J6X|1|2S|A|1933
3J6X|1|2S|G|1934
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 1S
- Small subunit ribosomal RNA; SSU rRNA
- Chain 81
- 60S ribosomal protein L41
- Chain 83
- 60S ribosomal protein L43
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