IL_3J6X_184
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UUGA*UACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6X_184 not in the Motif Atlas
- Homologous match to IL_8C3A_109
- Geometric discrepancy: 0.2218
- The information below is about IL_8C3A_109
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
3J6X|1|2S|U|2718
3J6X|1|2S|U|2719
3J6X|1|2S|G|2720
3J6X|1|2S|A|2721
*
3J6X|1|2S|U|2735
3J6X|1|2S|A|2736
3J6X|1|2S|C|2737
3J6X|1|2S|A|2738
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 58
- 60S ribosomal protein L18
- Chain 61
- 60S ribosomal protein L21
- Chain 69
- 60S ribosomal protein L29
- Chain 82
- 60S ribosomal protein L42
- Chain L5
- 60S ribosomal protein L5
Coloring options: