IL_3J6X_190

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

3J6X|1|2S|G|2945, 3J6X|1|2S|A|2946

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6X_190 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.2142

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

3J6X|1|2S|C|2879
3J6X|1|2S|U|2880
3J6X|1|2S|C|2881
*
3J6X|1|2S|G|2943
3J6X|1|2S|U|2944
3J6X|1|2S|G|2945
3J6X|1|2S|A|2946
3J6X|1|2S|G|2947

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 63

60S ribosomal protein L23

Chain L3

60S ribosomal protein L3