IL_3J6X_223
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- AGUG*CAU
- Length
- 7 nucleotides
- Bulged bases
- 3J6X|1|5S|U|86
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6X_223 not in the Motif Atlas
- Homologous match to IL_5TBW_378
- Geometric discrepancy: 0.2071
- The information below is about IL_5TBW_378
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
3J6X|1|5S|A|84
3J6X|1|5S|G|85
3J6X|1|5S|U|86
3J6X|1|5S|G|87
*
3J6X|1|5S|C|94
3J6X|1|5S|A|95
3J6X|1|5S|U|96
Current chains
- Chain 5S
- 5S ribosomal RNA
Nearby chains
- Chain 2S
- Large subunit ribosomal RNA; LSU rRNA
- Chain 50
- 60S ribosomal protein L10
- Chain 60
- 60S ribosomal protein L20
- Chain L7
- 60S ribosomal protein L7
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