IL_3J6X_227
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UAUAAC*GCUAAUA
- Length
- 13 nucleotides
- Bulged bases
- 3J6X|1|1S|U|170
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6X_227 not in the Motif Atlas
- Geometric match to IL_4LFB_009
- Geometric discrepancy: 0.3014
- The information below is about IL_4LFB_009
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_00680.1
- Basepair signature
- cWW-L-R-tWH-L-R-L-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
3J6X|1|1S|U|144
3J6X|1|1S|A|145
3J6X|1|1S|U|146
3J6X|1|1S|A|147
3J6X|1|1S|A|148
3J6X|1|1S|C|149
*
3J6X|1|1S|G|165
3J6X|1|1S|C|166
3J6X|1|1S|U|167
3J6X|1|1S|A|168
3J6X|1|1S|A|169
3J6X|1|1S|U|170
3J6X|1|1S|A|171
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 24
- 40S ribosomal protein S24
- Chain S6
- 40S ribosomal protein S6
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