IL_3J6X_231
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GUUAAAA*UC
- Length
- 9 nucleotides
- Bulged bases
- 3J6X|1|1S|A|619
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6X_231 not in the Motif Atlas
- Homologous match to IL_8P9A_405
- Geometric discrepancy: 0.2081
- The information below is about IL_8P9A_405
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_20847.1
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 5
Unit IDs
3J6X|1|1S|G|616
3J6X|1|1S|U|617
3J6X|1|1S|U|618
3J6X|1|1S|A|619
3J6X|1|1S|A|620
3J6X|1|1S|A|621
3J6X|1|1S|A|622
*
3J6X|1|1S|U|1104
3J6X|1|1S|C|1105
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 23
- 40S ribosomal protein S23
- Chain 26
- 40S ribosomal protein S26
- Chain S2
- 40S ribosomal protein S2
Coloring options: