IL_3J6X_242
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- UGACC*GCGUCA
- Length
- 11 nucleotides
- Bulged bases
- 3J6X|1|8S|C|151
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6X_242 not in the Motif Atlas
- Geometric match to IL_8D29_010
- Geometric discrepancy: 0.2892
- The information below is about IL_8D29_010
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 17
Unit IDs
3J6X|1|2S|U|4
3J6X|1|2S|G|5
3J6X|1|2S|A|6
3J6X|1|2S|C|7
3J6X|1|2S|C|8
*
3J6X|1|8S|G|150
3J6X|1|8S|C|151
3J6X|1|8S|G|152
3J6X|1|8S|U|153
3J6X|1|8S|C|154
3J6X|1|8S|A|155
Current chains
- Chain 2S
- 25S ribosomal RNA
- Chain 8S
- 5.8S ribosomal RNA
Nearby chains
- Chain 55
- 60S ribosomal protein L15
- Chain 65
- 60S ribosomal protein L25
- Chain L8
- 60S ribosomal protein L8
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