IL_3J6X_254
3D structure
- PDB id
- 3J6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CAUA*UAAGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6X_254 not in the Motif Atlas
- Homologous match to IL_8C3A_486
- Geometric discrepancy: 0.2205
- The information below is about IL_8C3A_486
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28976.1
- Basepair signature
- cWW-L-cWW-cSH-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
3J6X|1|2S|C|2889
3J6X|1|2S|A|2890
3J6X|1|2S|U|2891
3J6X|1|2S|A|2892
*
3J6X|1|2S|U|2909
3J6X|1|2S|A|2910
3J6X|1|2S|A|2911
3J6X|1|2S|G|2912
3J6X|1|2S|C|2913
3J6X|1|2S|G|2914
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 56
- 60S ribosomal protein L16
- Chain 63
- 60S ribosomal protein L23
- Chain 80
- 60S ribosomal protein L40
- Chain L3
- 60S ribosomal protein L3
- Chain L9
- 60S ribosomal protein L9
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