IL_3J6X_256

3D structure

PDB id

3J6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 5 degree rotation (Class II)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

UUUG*CUUA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6X_256 not in the Motif Atlas

Geometric match to IL_8ID2_001

Geometric discrepancy: 0.2032

The information below is about IL_8ID2_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

3J6X|1|2S|U|3300
3J6X|1|2S|U|3301
3J6X|1|2S|U|3302
3J6X|1|2S|G|3303
*
3J6X|1|2S|C|3311
3J6X|1|2S|U|3312
3J6X|1|2S|U|3313
3J6X|1|2S|A|3314

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 57

60S ribosomal protein L17

Chain 71

60S ribosomal protein L31

Chain L3

60S ribosomal protein L3