IL_3J6Y_003

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

UCAAA*UGACAA

Length

11 nucleotides

Bulged bases

3J6Y|1|1S|A|468

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_003 not in the Motif Atlas

Geometric match to IL_4V88_386

Geometric discrepancy: 0.2116

The information below is about IL_4V88_386

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_37842.2

Basepair signature

cWW-cWW-L-R-cWW-cWW-R-L

Number of instances in this motif group

4

Unit IDs

3J6Y|1|1S|U|37
3J6Y|1|1S|C|38
3J6Y|1|1S|A|39
3J6Y|1|1S|A|40
3J6Y|1|1S|A|41
*
3J6Y|1|1S|U|466
3J6Y|1|1S|G|467
3J6Y|1|1S|A|468
3J6Y|1|1S|C|469
3J6Y|1|1S|A|470
3J6Y|1|1S|A|471

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 24

40S ribosomal protein S24

Chain S4

40S ribosomal protein S4

Chain S9

40S ribosomal protein S9