IL_3J6Y_011

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

UAUAAC*GCUAAUA

Length

13 nucleotides

Bulged bases

3J6Y|1|1S|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_011 not in the Motif Atlas

Geometric match to IL_4LFB_009

Geometric discrepancy: 0.2401

The information below is about IL_4LFB_009

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_12745.1

Basepair signature

cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

1

Unit IDs

3J6Y|1|1S|U|144
3J6Y|1|1S|A|145
3J6Y|1|1S|U|146
3J6Y|1|1S|A|147
3J6Y|1|1S|A|148
3J6Y|1|1S|C|149
*
3J6Y|1|1S|G|165
3J6Y|1|1S|C|166
3J6Y|1|1S|U|167
3J6Y|1|1S|A|168
3J6Y|1|1S|A|169
3J6Y|1|1S|U|170
3J6Y|1|1S|A|171

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 24

40S ribosomal protein S24

Chain S6

40S ribosomal protein S6