IL_3J6Y_039
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CUUU*AUGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_039 not in the Motif Atlas
- Geometric match to IL_3TZR_003
- Geometric discrepancy: 0.2253
- The information below is about IL_3TZR_003
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
3J6Y|1|1S|C|747
3J6Y|1|1S|U|748
3J6Y|1|1S|U|749
3J6Y|1|1S|U|750
*
3J6Y|1|1S|A|799
3J6Y|1|1S|U|800
3J6Y|1|1S|G|801
3J6Y|1|1S|G|802
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 11
- 40S ribosomal protein S11
- Chain 22
- 40S ribosomal protein S22
- Chain S4
- 40S ribosomal protein S4
- Chain S7
- 40S ribosomal protein S7
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