IL_3J6Y_050
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 3J6Y|1|1S|C|1096, 3J6Y|1|1S|U|1098, 3J6Y|1|1S|G|1100
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_050 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.2246
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
3J6Y|1|1S|C|1034
3J6Y|1|1S|G|1035
3J6Y|1|1S|A|1036
*
3J6Y|1|1S|U|1095
3J6Y|1|1S|C|1096
3J6Y|1|1S|U|1097
3J6Y|1|1S|U|1098
3J6Y|1|1S|U|1099
3J6Y|1|1S|G|1100
3J6Y|1|1S|G|1101
Current chains
- Chain 1S
- 18S ribosomal RNA
Nearby chains
- Chain 11
- 40S ribosomal protein S11
- Chain 13
- 40S ribosomal protein S13
- Chain 22
- 40S ribosomal protein S22
- Chain 23
- 40S ribosomal protein S23
- Chain 27
- 40S ribosomal protein S27
- Chain S2
- 40S ribosomal protein S2
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