3D structure

PDB id
3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
Experimental method
ELECTRON MICROSCOPY
Resolution
6.1 Å

Loop

Sequence
GGAGUAUG*UGAAAC
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3J6Y_053 not in the Motif Atlas
Homologous match to IL_4V88_440
Geometric discrepancy: 0.1378
The information below is about IL_4V88_440
Detailed Annotation
8x6 Sarcin-Ricin with inserted Y; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_41756.1
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW-L
Number of instances in this motif group
5

Unit IDs

3J6Y|1|1S|G|1111
3J6Y|1|1S|G|1112
3J6Y|1|1S|A|1113
3J6Y|1|1S|G|1114
3J6Y|1|1S|U|1115
3J6Y|1|1S|A|1116
3J6Y|1|1S|U|1117
3J6Y|1|1S|G|1118
*
3J6Y|1|1S|U|1129
3J6Y|1|1S|G|1130
3J6Y|1|1S|A|1131
3J6Y|1|1S|A|1132
3J6Y|1|1S|A|1133
3J6Y|1|1S|C|1134

Current chains

Chain 1S
18S ribosomal RNA

Nearby chains

Chain 23
40S ribosomal protein S23
Chain 2S
Large subunit ribosomal RNA; LSU rRNA
Chain 81
60S ribosomal protein L41

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