IL_3J6Y_070

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

3J6Y|1|1S|A|1346, 3J6Y|1|1S|U|1347

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_070 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.2107

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

3J6Y|1|1S|A|1345
3J6Y|1|1S|A|1346
3J6Y|1|1S|U|1347
3J6Y|1|1S|A|1348
*
3J6Y|1|1S|U|1377
3J6Y|1|1S|U|1378
3J6Y|1|1S|C|1379
3J6Y|1|1S|U|1380

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 16

40S ribosomal protein S16

Chain 20

40S ribosomal protein S20