IL_3J6Y_074

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_074 not in the Motif Atlas

Homologous match to IL_4V88_461

Geometric discrepancy: 0.199

The information below is about IL_4V88_461

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

3J6Y|1|1S|C|1495
3J6Y|1|1S|U|1496
3J6Y|1|1S|U|1497
3J6Y|1|1S|G|1498
*
3J6Y|1|1S|C|1509
3J6Y|1|1S|U|1510
3J6Y|1|1S|U|1511
3J6Y|1|1S|G|1512

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 19

40S ribosomal protein S19

Chain 29

40S ribosomal protein S29