IL_3J6Y_076

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

3J6Y|1|1S|C|1637, 3J6Y|1|1S|A|1766

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_076 not in the Motif Atlas

Homologous match to IL_4V88_463

Geometric discrepancy: 0.2266

The information below is about IL_4V88_463

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

3J6Y|1|1S|C|1636
3J6Y|1|1S|C|1637
3J6Y|1|1S|G|1638
*
3J6Y|1|1S|C|1764
3J6Y|1|1S|A|1765
3J6Y|1|1S|A|1766
3J6Y|1|1S|G|1767

Current chains

Chain 1S

18S ribosomal RNA

Nearby chains

Chain 14

40S ribosomal protein S14

Chain 26

40S ribosomal protein S26

Chain IR

TSV IRES mRNA