IL_3J6Y_093
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- CUUAGUAA*UGAAGCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_093 not in the Motif Atlas
- Homologous match to IL_8C3A_006
- Geometric discrepancy: 0.188
- The information below is about IL_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
3J6Y|1|2S|C|82
3J6Y|1|2S|U|83
3J6Y|1|2S|U|84
3J6Y|1|2S|A|85
3J6Y|1|2S|G|86
3J6Y|1|2S|U|87
3J6Y|1|2S|A|88
3J6Y|1|2S|A|89
*
3J6Y|1|2S|U|97
3J6Y|1|2S|G|98
3J6Y|1|2S|A|99
3J6Y|1|2S|A|100
3J6Y|1|2S|G|101
3J6Y|1|2S|C|102
3J6Y|1|2S|G|103
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 53
- 60S ribosomal protein L13
- Chain 55
- 60S ribosomal protein L15
- Chain 58
- 60S ribosomal protein L18
- Chain 68
- 60S ribosomal protein L28
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