IL_3J6Y_105

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

GUG*CAGC

Length

7 nucleotides

Bulged bases

3J6Y|1|2S|A|578

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_105 not in the Motif Atlas

Geometric match to IL_3ICQ_003

Geometric discrepancy: 0.2177

The information below is about IL_3ICQ_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

3J6Y|1|2S|G|511
3J6Y|1|2S|U|512
3J6Y|1|2S|G|513
*
3J6Y|1|2S|C|577
3J6Y|1|2S|A|578
3J6Y|1|2S|G|579
3J6Y|1|2S|C|580

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 73

60S ribosomal protein L33

Chain L4

60S ribosomal protein L4

Chain L7

60S ribosomal protein L7