IL_3J6Y_110
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GGGGC*GUGCAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_110 not in the Motif Atlas
- Geometric match to IL_4V9F_018
- Geometric discrepancy: 0.2279
- The information below is about IL_4V9F_018
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_67427.1
- Basepair signature
- cWW-cWW-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
3J6Y|1|2S|G|725
3J6Y|1|2S|G|726
3J6Y|1|2S|G|727
3J6Y|1|2S|G|728
3J6Y|1|2S|C|729
*
3J6Y|1|2S|G|740
3J6Y|1|2S|U|741
3J6Y|1|2S|G|742
3J6Y|1|2S|C|743
3J6Y|1|2S|A|744
3J6Y|1|2S|C|745
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 58
- 60S ribosomal protein L18
- Chain 69
- 60S ribosomal protein L29
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