IL_3J6Y_115
3D structure
- PDB id
- 3J6Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.1 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 3J6Y|1|2S|A|933, 3J6Y|1|2S|G|937
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3J6Y_115 not in the Motif Atlas
- Homologous match to IL_8C3A_030
- Geometric discrepancy: 0.1614
- The information below is about IL_8C3A_030
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
3J6Y|1|2S|G|805
3J6Y|1|2S|A|806
3J6Y|1|2S|A|807
3J6Y|1|2S|A|808
3J6Y|1|2S|G|809
*
3J6Y|1|2S|C|931
3J6Y|1|2S|U|932
3J6Y|1|2S|A|933
3J6Y|1|2S|G|934
3J6Y|1|2S|U|935
3J6Y|1|2S|A|936
3J6Y|1|2S|G|937
3J6Y|1|2S|C|938
Current chains
- Chain 2S
- 25S ribosomal RNA
Nearby chains
- Chain 53
- 60S ribosomal protein L13
- Chain 55
- 60S ribosomal protein L15
- Chain 68
- 60S ribosomal protein L28
- Chain 77
- 60S ribosomal protein L37
- Chain L4
- 60S ribosomal protein L4
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