IL_3J6Y_117

3D structure

PDB id

3J6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

S. cerevisiae 80S ribosome bound with Taura syndrome virus (TSV) IRES, 2 degree rotation (Class I)

Experimental method

ELECTRON MICROSCOPY

Resolution

6.1 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3J6Y_117 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.1346

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

3J6Y|1|2S|U|834
3J6Y|1|2S|G|835
3J6Y|1|2S|A|836
3J6Y|1|2S|A|837
3J6Y|1|2S|G|838
*
3J6Y|1|2S|U|855
3J6Y|1|2S|G|856
3J6Y|1|2S|G|857
3J6Y|1|2S|A|858
3J6Y|1|2S|G|859

Current chains

Chain 2S

25S ribosomal RNA

Nearby chains

Chain 59

60S ribosomal protein L19

Chain 83

60S ribosomal protein L43

Chain L2

60S ribosomal protein L2